PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 330aa    MW: 36240.8 Da    PI: 8.564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05337genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.8e-112145226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                + + C +++rtGtC yG+rC+++H+
  PEQU_05337 21 GKRDCAYYLRTGTCGYGERCRYHHP 45
                7899********************9 PP

2zf-CCCH31.92.3e-106894127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                y+++ C +f++tGtCk+G++Ck++H++
  PEQU_05337 68 YGQPFCEYFLKTGTCKFGSSCKYHHPR 94
                56666********************96 PP

3zf-CCCH40.93.3e-13114140127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++e+C++f++tG Ck+G +CkF+H++
  PEQU_05337 114 PGEEECSYFMKTGKCKFGLTCKFHHPQ 140
                 589**********************97 PP

4zf-CCCH39.21.2e-12273299127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+ff+rtG+Ck+G+ C+++H+p
  PEQU_05337 273 PGQPECQFFMRTGQCKFGAACRYHHPP 299
                 5789*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8591947IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-51946IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-82145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-72248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-52545IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-76695IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-66794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4276795IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-86994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-57294IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155113141IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6116141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4119139IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324272300IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5276299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4278298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MWRLELGGGG NRGGGLPERP GKRDCAYYLR TGTCGYGERC RYHHPLDRVS TQVAGPARLV  60
AGEYPERYGQ PFCEYFLKTG TCKFGSSCKY HHPRQGDGSV QLVLLNSYGY PLRPGEEECS  120
YFMKTGKCKF GLTCKFHHPQ TTSASMPSPA PVFYPMVPTT SIATPQQYPE VGVWQVGRSS  180
SALSGAYMPS SYGPVLFSPR VLPVPGWNAY PTPINESASS GAQQSTQVEP LYWQHSQLSS  240
SASAYSGSYP LVTSLVGPST NNNQIEQNLP QRPGQPECQF FMRTGQCKFG AACRYHHPPN  300
WSITATNCSL NPLGLPLRPV SPFLSLQDNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796231.11e-134PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_008796233.11e-135PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X3
SwissprotQ5NAW21e-109C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLM0TP531e-122M0TP53_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10000_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.39e-95C3H family protein